Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition.
Identifieur interne : 000B35 ( Main/Exploration ); précédent : 000B34; suivant : 000B36Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition.
Auteurs : Fernando Manuel Matias Hurtado [Brésil] ; Maísa De Siqueira Pinto [Brésil] ; Perla Novais De Oliveira [Brésil] ; Diego Mauricio Ria O-Pach N [Brésil] ; Laura Beatriz Inocente [Brésil] ; Helaine Carrer [Brésil]Source :
- Genes [ 2073-4425 ] ; 2019.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (méthodes), Arabidopsis (génétique), Bois (génétique), Bois (métabolisme), Eucalyptus (génétique), Facteurs de transcription (génétique), Facteurs de transcription (métabolisme), Gènes de plante (génétique), Lamiaceae (génétique), Paroi cellulaire (génétique), Populus (génétique), Protéines végétales (génétique), Régulation de l'expression des gènes végétaux (génétique), Transcriptome (génétique), Xylème (génétique), Xylème (métabolisme).
- MESH :
- génétique : Arabidopsis, Bois, Eucalyptus, Facteurs de transcription, Gènes de plante, Lamiaceae, Paroi cellulaire, Populus, Protéines végétales, Régulation de l'expression des gènes végétaux, Transcriptome, Xylème.
- métabolisme : Bois, Facteurs de transcription, Xylème.
- méthodes : Analyse de profil d'expression de gènes.
English descriptors
- KwdEn :
- Arabidopsis (genetics), Cell Wall (genetics), Eucalyptus (genetics), Gene Expression Profiling (methods), Gene Expression Regulation, Plant (genetics), Genes, Plant (genetics), Lamiaceae (genetics), Plant Proteins (genetics), Populus (genetics), Transcription Factors (genetics), Transcription Factors (metabolism), Transcriptome (genetics), Wood (genetics), Wood (metabolism), Xylem (genetics), Xylem (metabolism).
- MESH :
- chemical , genetics : Plant Proteins, Transcription Factors.
- genetics : Arabidopsis, Cell Wall, Eucalyptus, Gene Expression Regulation, Plant, Genes, Plant, Lamiaceae, Populus, Transcriptome, Wood, Xylem.
- chemical , metabolism : Transcription Factors, Wood, Xylem.
- methods : Gene Expression Profiling.
Abstract
NAC proteins are one of the largest families of plant-specific transcription factors (TFs). They regulate diverse complex biological processes, including secondary xylem differentiation and wood formation. Recent genomic and transcriptomic studies of Tectona grandis L.f. (teak), one of the most valuable hardwood trees in the world, have allowed identification and analysis of developmental genes. In the present work, T. grandis NAC genes were identified and analyzed regarding to their evolution and expression profile during wood formation. We analyzed the recently published T. grandis genome, and identified 130 NAC proteins that are coded by 107 gene loci. These proteins were classified into 23 clades of the NAC family, together with Populus, Eucalyptus, and Arabidopsis. Data on transcript expression revealed specific temporal and spatial expression patterns for the majority of teak NAC genes. RT-PCR indicated expression of VND genes (Tg11g04450-VND2 and Tg15g08390-VND4) related to secondary cell wall formation in xylem vessels of 16-year-old juvenile trees. Our findings open a way to further understanding of NAC transcription factor genes in T. grandis wood biosynthesis, while they are potentially useful for future studies aiming to improve biomass and wood quality using biotechnological approaches.
DOI: 10.3390/genes11010020
PubMed: 31878092
PubMed Central: PMC7016782
Affiliations:
Links toward previous steps (curation, corpus...)
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Pádua Dias, 11, CP 9, Piracicaba, SP 13418-900</wicri:regionArea><orgName type="university">Université de São Paulo</orgName><placeName><settlement type="city">São Paulo</settlement><region type="state">État de São Paulo</region></placeName></affiliation></author></analytic><series><title level="j">Genes</title><idno type="eISSN">2073-4425</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Arabidopsis (genetics)</term><term>Cell Wall (genetics)</term><term>Eucalyptus (genetics)</term><term>Gene Expression Profiling (methods)</term><term>Gene Expression Regulation, Plant (genetics)</term><term>Genes, Plant (genetics)</term><term>Lamiaceae (genetics)</term><term>Plant Proteins (genetics)</term><term>Populus (genetics)</term><term>Transcription Factors (genetics)</term><term>Transcription Factors (metabolism)</term><term>Transcriptome (genetics)</term><term>Wood (genetics)</term><term>Wood (metabolism)</term><term>Xylem (genetics)</term><term>Xylem (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (méthodes)</term><term>Arabidopsis (génétique)</term><term>Bois (génétique)</term><term>Bois (métabolisme)</term><term>Eucalyptus (génétique)</term><term>Facteurs de transcription (génétique)</term><term>Facteurs de transcription (métabolisme)</term><term>Gènes de plante (génétique)</term><term>Lamiaceae (génétique)</term><term>Paroi cellulaire (génétique)</term><term>Populus (génétique)</term><term>Protéines végétales (génétique)</term><term>Régulation de l'expression des gènes végétaux (génétique)</term><term>Transcriptome (génétique)</term><term>Xylème (génétique)</term><term>Xylème (métabolisme)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Arabidopsis</term><term>Cell Wall</term><term>Eucalyptus</term><term>Gene Expression Regulation, Plant</term><term>Genes, Plant</term><term>Lamiaceae</term><term>Populus</term><term>Transcriptome</term><term>Wood</term><term>Xylem</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arabidopsis</term><term>Bois</term><term>Eucalyptus</term><term>Facteurs de transcription</term><term>Gènes de plante</term><term>Lamiaceae</term><term>Paroi cellulaire</term><term>Populus</term><term>Protéines végétales</term><term>Régulation de l'expression des gènes végétaux</term><term>Transcriptome</term><term>Xylème</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Transcription Factors</term><term>Wood</term><term>Xylem</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Gene Expression Profiling</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Bois</term><term>Facteurs de transcription</term><term>Xylème</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">NAC proteins are one of the largest families of plant-specific transcription factors (TFs). They regulate diverse complex biological processes, including secondary xylem differentiation and wood formation. Recent genomic and transcriptomic studies of <i>Tectona grandis</i> L.f. (teak), one of the most valuable hardwood trees in the world, have allowed identification and analysis of developmental genes. In the present work, <i>T. grandis</i> NAC genes were identified and analyzed regarding to their evolution and expression profile during wood formation. We analyzed the recently published <i>T. grandis</i> genome, and identified 130 NAC proteins that are coded by 107 gene loci. These proteins were classified into 23 clades of the NAC family, together with <i>Populus</i>, <i>Eucalyptus,</i> and <i>Arabidopsis.</i> Data on transcript expression revealed specific temporal and spatial expression patterns for the majority of teak NAC genes. RT-PCR indicated expression of VND genes (<i>Tg11g04450-VND2</i> and <i>Tg15g08390-VND4</i>) related to secondary cell wall formation in xylem vessels of 16-year-old juvenile trees. Our findings open a way to further understanding of NAC transcription factor genes in <i>T. grandis</i> wood biosynthesis, while they are potentially useful for future studies aiming to improve biomass and wood quality using biotechnological approaches.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31878092</PMID><DateCompleted><Year>2020</Year><Month>06</Month><Day>01</Day></DateCompleted><DateRevised><Year>2020</Year><Month>06</Month><Day>01</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2073-4425</ISSN><JournalIssue CitedMedium="Internet"><Volume>11</Volume><Issue>1</Issue><PubDate><Year>2019</Year><Month>12</Month><Day>23</Day></PubDate></JournalIssue><Title>Genes</Title><ISOAbbreviation>Genes (Basel)</ISOAbbreviation></Journal><ArticleTitle>Analysis of NAC Domain Transcription Factor Genes of <i>Tectona grandis</i> L.f. Involved in Secondary Cell Wall Deposition.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E20</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/genes11010020</ELocationID><Abstract><AbstractText>NAC proteins are one of the largest families of plant-specific transcription factors (TFs). They regulate diverse complex biological processes, including secondary xylem differentiation and wood formation. Recent genomic and transcriptomic studies of <i>Tectona grandis</i> L.f. (teak), one of the most valuable hardwood trees in the world, have allowed identification and analysis of developmental genes. In the present work, <i>T. grandis</i> NAC genes were identified and analyzed regarding to their evolution and expression profile during wood formation. We analyzed the recently published <i>T. grandis</i> genome, and identified 130 NAC proteins that are coded by 107 gene loci. These proteins were classified into 23 clades of the NAC family, together with <i>Populus</i>, <i>Eucalyptus,</i> and <i>Arabidopsis.</i> Data on transcript expression revealed specific temporal and spatial expression patterns for the majority of teak NAC genes. RT-PCR indicated expression of VND genes (<i>Tg11g04450-VND2</i> and <i>Tg15g08390-VND4</i>) related to secondary cell wall formation in xylem vessels of 16-year-old juvenile trees. Our findings open a way to further understanding of NAC transcription factor genes in <i>T. grandis</i> wood biosynthesis, while they are potentially useful for future studies aiming to improve biomass and wood quality using biotechnological approaches.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hurtado</LastName><ForeName>Fernando Manuel Matias</ForeName><Initials>FMM</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Av. Pádua Dias, 11, CP 9, Piracicaba, SP 13418-900, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pinto</LastName><ForeName>Maísa de Siqueira</ForeName><Initials>MS</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Av. Pádua Dias, 11, CP 9, Piracicaba, SP 13418-900, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Oliveira</LastName><ForeName>Perla Novais de</ForeName><Initials>PN</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Av. Pádua Dias, 11, CP 9, Piracicaba, SP 13418-900, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Riaño-Pachón</LastName><ForeName>Diego Mauricio</ForeName><Initials>DM</Initials><AffiliationInfo><Affiliation>Computational, Evolutionary and Systems Biology Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of São Paulo. Av. Centenário 303, Piracicaba SP 13416-000, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Inocente</LastName><ForeName>Laura Beatriz</ForeName><Initials>LB</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Av. Pádua Dias, 11, CP 9, Piracicaba, SP 13418-900, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Carrer</LastName><ForeName>Helaine</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo, Av. Pádua Dias, 11, CP 9, Piracicaba, SP 13418-900, Brazil.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>12</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Genes (Basel)</MedlineTA><NlmUniqueID>101551097</NlmUniqueID><ISSNLinking>2073-4425</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017360" MajorTopicYN="N">Arabidopsis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002473" MajorTopicYN="N">Cell Wall</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005052" MajorTopicYN="N">Eucalyptus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019686" MajorTopicYN="N">Lamiaceae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="N">Transcriptome</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D052584" MajorTopicYN="N">Xylem</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">secondary growth</Keyword><Keyword MajorTopicYN="Y">tropical tree</Keyword><Keyword MajorTopicYN="Y">wood formation</Keyword></KeywordList><CoiStatement>The authors declare no conflicts of interest.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>11</Month><Day>08</Day></PubMedPubDate><PubMedPubDate 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IdType="pubmed">27135336</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Brésil</li></country><region><li>État de São Paulo</li></region><settlement><li>São Paulo</li></settlement><orgName><li>Université de São Paulo</li></orgName></list><tree><country name="Brésil"><region name="État de São Paulo"><name sortKey="Hurtado, Fernando Manuel Matias" sort="Hurtado, Fernando Manuel Matias" uniqKey="Hurtado F" first="Fernando Manuel Matias" last="Hurtado">Fernando Manuel Matias Hurtado</name></region><name sortKey="Carrer, Helaine" sort="Carrer, Helaine" uniqKey="Carrer H" first="Helaine" last="Carrer">Helaine Carrer</name><name sortKey="Inocente, Laura Beatriz" sort="Inocente, Laura Beatriz" uniqKey="Inocente L" first="Laura Beatriz" last="Inocente">Laura Beatriz Inocente</name><name sortKey="Oliveira, Perla Novais De" sort="Oliveira, Perla Novais De" uniqKey="Oliveira P" first="Perla Novais De" last="Oliveira">Perla Novais De 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